A biogeographical assessment of anthropogenic threats to areas where different frog breeding groups occur in South Africa: implications for anuran conservation

Aim To determine the spatial relationship between areas where different frog breeding groups occur and elevated anthropogenic activities, and the conservation implications thereof. Location South Africa. Methods Data on frog distribution ranges for the southern African sub‐region were used to identify biogeographical areas within South Africa. A random draw technique was used to determine whether areas where different frog breeding groups occur were characterized by higher levels of anthropogenic threats than expected by chance. Four measures (human population density, percentage land transformation, percentage protected area and invasive alien plants richness) expected to reflect threats were analysed. Results Terrestrial‐breeders were more often spatially associated with areas of threat than expected by chance in three of the seven biogeographical regions examined with land transformation and invasive alien plant richness being most significant. The south central was the only region where terrestrial‐breeders were spatially congruent with protected areas. Areas where stream‐breeders occur were spatially congruent with anthropogenic threats (with alien plants being most consistent) in five of the seven regions examined while protected areas were well represented in four of the seven regions. Non‐significant results were found for permanent and temporary aquatic‐breeders at both the national and the biogeographical scale. Main conclusions By analysing data at the sub‐continental scale we were able to identify regional threats to amphibians traditionally classified at species‐specific scales. Our study recognized land transformation and alien invasive plants as significant threats to areas important for the long‐term breeding success of stream and terrestrial amphibians in South Africa. Areas where different breeding groups occur in the south‐western Cape showed the greatest spatial congruence with the threats examined. Areas where terrestrial breeding frogs occur are not well represented in the current conservation network. This has important implications in addressing the current status of threats on amphibians in a biogeographical context.     

Hierarchical resource selection by impala in a savanna environment

The factors that affect resource selection by a foraging herbivore can vary according to the resources or conditions associated with particular levels of organization in the environment, and to the scales over which the herbivore perceives and responds to those resources and conditions. To investigate the role of forage in this hierarchical process, we studied resource selection by a mixed‐feeding large herbivore, the impala (Aepyceros melampus). We focussed on three spatial scales: plant species, feeding station and feeding patch. In paired sites where impala were and were not observed, we identified the plant species from which animals fed, the attributes of the plants, and the characteristics of the broader site. Across all three scales, plant species available as forage was central in determining resource selection by impala. At the species level, that effect was modified by the nutritional quality (greenness) and whether it was during a period of forage abundance or scarcity (season). At the feeding‐station level, overall greenness and biomass of the station were important, but their effects were modified by the season. At the feeding‐patch level, broader‐scale factors such as the type of vegetation cover had an important influence on resource selection. The grass Panicum maximum was a preferred forage species and a key resource determining the locations of feeding impala. Our findings support the idea that selection by a foraging herbivore at fine scales (i.e. diet selection) can have consequences for broader‐scale selection that result in observed patterns of habitat use and animal distribution.     

Large‐scale patterns of tree species richness and the metabolic theory of ecology

The metabolic theory of ecology (MTE) endeavours to explain ecosystem structure and function in terms of the effects of temperature and body size on metabolic rate. In a recent paper (Wang et al., 2009, Proceedings of the National Academy of Sciences USA, 106 , 13388), we tested the MTE predictions of species richness using tree distributions in eastern Asia and North America. Our results supported the linear relationship between log‐transformed species richness and the inverse of absolute temperature predicted by the MTE, but the slope strongly depends on spatial scale. The results also indicate that there are more tree species in cold climate at high latitudes in North America than in eastern Asia, but the reverse is true in warm climate at low latitudes. Qian & Ricklefs (2011, Global Ecology and Biogeography, 20 , 362–365) recently questioned our data and some of the analyses. Here we reply to them, and provide further analyses to show that their critiques are primarily based on unsuitable data and subjective conjecture.     

Common ancestry or environmental trait filters: cross‐continental comparisons of trait–habitat relationships in tropical anuran amphibian assemblages

Aim To investigate whether trait–habitat relations in biological communities converge across three global regions. The goal is to assess the role of habitat templets in shaping trait assemblages when different assembly mechanisms are operating and to test whether trait–habitat relations reflect a common evolutionary history or environmental trait filters. Location Guiana Shield, South America; Upper Guinea Forest Block, West Africa; Borneo rain forests, Southeast Asia. Methods We compared large anuran amphibian data sets at both the regional and cross‐continental scale. We applied a combination of three‐table ordinations (RLQ) and permutation model‐based multivariate fourth‐corner statistics to test for trait–habitat relationships at both scales and used phylogenetic comparative methods to quantify phylogenetic signal in traits that enter these analyses. Results Despite the existence of significant trait–habitat links and congruent trait patterns, we did not find evidence for the existence of a universal trait–habitat relationship at the assemblage level and no clear sign for cross‐continental convergence of trait–habitat relations. Patterns rather varied between continents. Despite the fact that a number of traits were conserved across phylogenies, the phylogenetic signal varied between regions. Trait–habitat relations therefore not only reflect a common evolutionary history, but also more recently operating environmental trait filters that ultimately determine the trait composition in regional assemblages. Main conclusions Integrating trait–habitat links into analyses of biological assemblages can enhance the predictive power and general application of species assembly rules in community and macroecology, particularly when phylogenetic comparative methods are simultaneously applied. However, in order to predict trait composition based on habitat templets, trait–habitat links cannot be assumed to be universal but rather have to be individually established in different regions prior to model building. Only then can direct trait‐based approaches be useful tools for predicting fundamental community patterns.     

Taste responses in primates to citric and acetic acid

By means of two-bottle preference tests, the threshold values in four South American primate species were evaluated for citric acid and compared with those for acetic acid. Aotus trivirgatusshows a special preference for both acid compounds. These physiological findings may reflect the ecology of Aotus.     

Increased muricide and decreased avoidance and discrimination learning in thiamine deficient rats.

This study assessed the effects of diet-induced thiamine deficiency in rats on two aspects of behavior, aggression and learning. Evidence of enhanced aggression (increased mouse killing) was noted with severe thiamine deficiency, but before the onset of overt neurological signs of thiamine deprivation. This behavioral change was rapidly reversible with thiamine. A similar degree of thiamine deficiency failed to alter learning of two-way shuttle-box avoidance acquisition. Animals with a gross neurological deficit did exhibit a major impairment in shuttle-box performance, but this was probably due to ataxia. However, when such rats were administered thiamine with total reversal of the neurological signs, testing in a three chambered Y-maze avoidance-discrimination apparatus also revealed impaired learning of both responses. These data demonstrate the presence of enhanced aggression during thiamine deprivation and of a persistent learning impairment in rats following reversal of this vitamin deficiency.     

Didymocarpus geitleri,a remarkable new species ofGesneriaceae with deceptive pollen flowers

Didymocarpus geitleri spec. nov. is described from Sungai Pandan, Kuantan distr., Pahang, Peninsular Malaysia. Distinctive features include: leaden-grey leaves with long, erect hairs on the upper side and whitish, campanulate flowers with a long exserted, bright yellow style. The colouring of the latter is caused by densely arranged glands. Together with two yellow blotches in front of the filament insertion, the style apparently acts as an anther (pollen) dummy.The paper and the species is dedicated to my greatly respected teacher of Systematic Botany, Prof. DrLothar Geitler, on the occasion of his 90th birthday.     

Climate oscillation during the Quaternary associated with landscape heterogeneity promoted allopatric lineage divergence of a temperate tree Kalopanax septemlobus (Araliaceae) in East Asia

We investigated the biogeographic history of Kalopanax septemlobus, one of the most widespread temperate tree species in East Asia, using a combined phylogeographic and palaeodistribution modelling approach. Range-wide genetic differentiation at nuclear microsatellites (G'(ST) = 0.709; 2205 samples genotyped at five loci) and chloroplast DNA (G(ST) = 0.697; 576 samples sequenced for 2055 bp at three fragments) was high. A major phylogeographic break in Central China corresponded with those of other temperate species and the spatial delineation of the two temperate forest subkingdoms of East Asia, consistent with the forests having been isolated within both East and West China for multiple glacial-interglacial cycles. Evidence for multiple glacial refugia was found in most of its current range in China, South Japan and the southernmost part of the Korean Peninsula. In contrast, lineage admixture and absence of private alleles and haplotypes in Hokkaido and the northern Korean Peninsula support a postglacial origin of northernmost populations. Although palaeodistribution modelling predicted suitable climate across a land-bridge extending from South Japan to East China during the Last Glacial Maximum, the genetic differentiation of regional populations indicated a limited role of the exposed sea floor as a dispersal corridor at that time. Overall, this study provides evidence that differential impacts of Quaternary climate oscillation associated with landscape heterogeneity have shaped the genetic structure of a wide-ranging temperate tree in East Asia.     

Multilocus coalescent analysis of haemoglobin differentiation between low- and high-altitude populations of crested ducks (Lophonetta specularioides)

Hypoxia is a key factor determining survival, and haemoglobins are targets of selection in species native to high-altitude regions. We studied population genetic structure and evaluated evidence for local adaptation in the crested duck (Lophonetta specularioides). Differentiation, gene flow and time since divergence between highland and lowland populations were assessed for three haemoglobin genes (α(A) , α(D) , β(A) ) and compared to seven reference loci (six autosomal introns and mtDNA). Four derived amino acid replacements were found in the globin genes that had elevated Φ(ST) values between the Andean highlands and Patagonian lowlands. A single β(A) -globin polymorphism at a site known to influence O(2) affinity was fixed for different alleles in the two populations, whereas three α(A) - and α(D) -globin polymorphisms exhibited high heterozygosity in the highlands but not in the lowlands. Coalescent analyses supported restricted gene flow for haemoglobin alleles and mitochondrial DNA but nonzero gene flow for the introns. Simulating genetic data under a drift-migration model of selective neutrality, the β(A) -globin fell outside the 95% confidence limit of simulated data, suggesting that directional selection is maintaining different variants in the contrasting elevational environments, thereby restricting migration of β(A) -globin alleles. The α(A) - and α(D) -globins, by contrast, did not differ from the simulated values, suggesting that variants in these genes are either selectively neutral, or that the effects of selection could not be differentiated from background levels of population structure and linkage disequilibrium. This study illustrates the combined effects of selection and population history on inferring levels of population divergence for a species distributed across an altitudinal gradient in which selection for hypoxia resistance has likely played an important role.